Geneva report for
2636326
General information
Genbank ID:
2636326
Gene name:
spsA
COG
COG0463
Current annotation:
spore coat polysaccharide synthesis
BLOCKS
information
BLOCKS hits
no blocks match
PRINTS
information
PRINTS hits
no prints match
Pfam
information (
readme
)
PFAM hits
:
Glycos_transf_2
:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block
readme
)
Clustering on variable region
(
hierachical clustering
,average percent identity between clusters < 30%)
On query region 126 to 256, total sequences extracted for clustering = 20
Cluster 1:
gid=29376684
[102-252] [Enterococcus faecalis V583]
Cluster 2:
gid=21222205
[99-257] [Streptomyces coelicolor A3(2)]
gid=23100380
[108-258] [Oceanobacillus iheyensis HTE831]
Cluster 3:
gid=17230560
[186-316] [Nostoc sp. PCC 7120]
Cluster 4:
gid=14521365
[168-298] [Pyrococcus abyssi]
gid=14590308
[164-294] [Pyrococcus horikoshii]
Cluster 5:
gid=21674094
[123-217] [Chlorobium tepidum TLS]
Cluster 6:
gid=12006005
[123-268] [Lactobacillus delbrueckii subsp. bulgaricus]
Cluster 7:
gid=15615929
[126-233] [Bacillus halodurans]
Cluster 8:
gid=34580462
[122-281] [Rickettsia sibirica]
gid=15604311
[121-280] [Rickettsia prowazekii]
gid=15892546
[122-281] [Rickettsia conorii]
Cluster 9:
gid=17940062
[117-273] [Leptospira interrogans]
Cluster 10:
gid=15600193
[118-294] [Pseudomonas aeruginosa PA01]
Cluster 11:
gid=29349689
[111-277] [Bacteroides thetaiotaomicron VPI-5482]
Cluster 12:
gid=22999126
[120-297] [Magnetococcus sp. MC-1]
Cluster 13:
gid=30019357
[178-308] [Bacillus cereus ATCC 14579]
Cluster 14:
gid=18266405
[128-265] [Escherichia coli]
Cluster 15:
gid=32265580
[187-317] [Helicobacter hepaticus ATCC 51449]
Cluster 16:
gid=16080842
[126-256] [Bacillus subtilis]
Short motifs reported by
MEME
(
readme
)
MEME motif diagram in this region
Motif alignments
Motif 1
Motif 2