Geneva report for 2314413
General information
Genbank ID: 2314413
Gene name:HP1248
COGCOG0557
Current annotation:virulence associated protein homolog (vacB)
BLOCKS information
BLOCKS hits:IPB001900:
BLOCKS diagram
PRINTS information
PRINTS hitsno prints match
Pfam information (readme)
PFAM hits:RNB:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block readme)


Clustering on variable region (hierachical clustering,average percent identity between clusters < 30%)
On query region 1 to 206, total sequences extracted for clustering = 89
Cluster 1:
gid=15794292[1-268] [Neisseria meningitidis Z2491]
gid=22990201[1-253] [Burkholderia fungorum]
gid=25108920[1-256] [N/A]
gid=21242317[1-232] [Xanthomonas axonopodis pv. citri str. 306]
gid=30248367[1-267] [Nitrosomonas europaea ATCC 19718]
gid=23467938[1-282] [Haemophilus somnus 129PT]
gid=15617156[1-270] [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
gid=29654398[1-259] [Coxiella burnetii RSA 493]
gid=16272801[1-266] [Haemophilus influenzae Rd]
gid=33151871[1-258] [Haemophilus ducreyi 35000HP]
gid=28198725[1-259] [Xylella fastidiosa Temecula1]
gid=17646566[1-199] [Methylococcus capsulatus]
gid=15603819[1-268] [Pasteurella multocida]
gid=391901[1-260] [Shigella flexneri]		Cluster 2:
gid=15618415[1-217] [Chlamydophila pneumoniae CWL029]
gid=15605122[1-214] [Chlamydia trachomatis]
gid=15835291[1-214] [Chlamydia muridarum]
gid=29840007[1-220] [Chlamydophila caviae GPIC]
Cluster 3:
gid=15241738[189-394] [Arabidopsis thaliana]
gid=34222082[189-394] [Arabidopsis thaliana]		Cluster 4:
gid=17231942[72-277] [Nostoc sp. PCC 7120]
gid=23129239[72-277] [Nostoc punctiforme]
gid=22298194[58-263] [Thermosynechococcus elongatus BP-1]
Cluster 5:
gid=23038196[1-202] [Oenococcus oeni MCW]		Cluster 6:
gid=16765046[1-197] [Salmonella typhimurium LT2]
gid=559438[1-197] [Escherichia coli]
gid=27366602[1-192] [Vibrio vulnificus CMCP6]
gid=15601560[1-199] [Vibrio cholerae]
gid=32034113[1-188] [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gid=16122464[1-197] [Yersinia pestis]
gid=33152350[1-189] [Haemophilus ducreyi 35000HP]
gid=16760178[1-197] [Salmonella enterica subsp. enterica serovar Typhi]
Cluster 7:
gid=32266033[1-176] [Helicobacter hepaticus ATCC 51449]		Cluster 8:
gid=16126692[1-268] [Caulobacter crescentus CB15]
gid=27380223[1-256] [Bradyrhizobium japonicum]
gid=22965039[1-262] [Rhodopseudomonas palustris]
gid=23109294[1-261] [Novosphingobium aromaticivorans]
gid=22958235[1-250] [Rhodobacter sphaeroides]
gid=17989010[1-285] [Brucella melitensis]
gid=23016311[1-266] [Magnetospirillum magnetotacticum]
gid=13470989[1-269] [Mesorhizobium loti]
gid=15888628[1-283] [Agrobacterium tumefaciens]
gid=15965052[1-292] [Sinorhizobium meliloti]
Cluster 9:
gid=15805382[1-266] [Deinococcus radiodurans]		Cluster 10:
gid=29377102[1-269] [Enterococcus faecalis V583]
gid=23003758[1-262] [Lactobacillus gasseri]
gid=23024105[1-249] [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Cluster 11:
gid=34558170[6-210] [Wolinella succinogenes]
gid=15791991[4-210] [Campylobacter jejuni]		Cluster 12:
gid=15616115[1-242] [Bacillus halodurans]
gid=15923770[1-269] [Staphylococcus aureus subsp. aureus Mu50]
gid=16804487[1-258] [Listeria monocytogenes EGD-e]
gid=16080414[1-257] [Bacillus subtilis]
gid=28210140[1-239] [Clostridium tetani E88]
gid=15894003[1-239] [Clostridium acetobutylicum]
gid=18310278[1-241] [Clostridium perfringens]
gid=23099883[1-259] [Oceanobacillus iheyensis HTE831]
gid=16801605[1-258] [Listeria innocua]
gid=20807463[1-242] [Thermoanaerobacter tengcongensis]
gid=27467483[1-260] [Staphylococcus epidermidis ATCC 12228]
gid=23020108[1-244] [Clostridium thermocellum ATCC 27405]
Cluster 13:
gid=26327903[1-192] [Mus musculus]		Cluster 14:
gid=23136616[1-281] [Cytophaga hutchinsonii]
gid=29348486[1-257] [Bacteroides thetaiotaomicron VPI-5482]
gid=34541350[1-247] [Porphyromonas gingivalis W83]
Cluster 15:
gid=19703943[1-240] [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]		Cluster 16:
gid=33863013[83-288] [Prochlorococcus marinus str. MIT 9313]
Cluster 17:
gid=15828822[1-245] [Mycoplasma pulmonis]		Cluster 18:
gid=23028335[1-192] [Microbulbifer degradans 2-40]
Cluster 19:
gid=24379988[1-262] [Streptococcus mutans UA159]
gid=19745621[1-248] [Streptococcus pyogenes MGAS8232]
gid=25011590[1-262] [Streptococcus agalactiae NEM316]
gid=15902922[1-260] [Streptococcus pneumoniae R6]		Cluster 20:
gid=15643485[1-255] [Thermotoga maritima]
Cluster 21:
gid=15607021[1-250] [Aquifex aeolicus]		Cluster 22:
gid=21673344[1-245] [Chlorobium tepidum TLS]
Cluster 23:
gid=23053471[1-239] [Geobacter metallireducens]		Cluster 24:
gid=15673187[1-197] [Lactococcus lactis subsp. lactis]
Cluster 25:
gid=13357613[1-258] [Ureaplasma urealyticum]
gid=31544662[1-265] [Mycoplasma gallisepticum R]
gid=26553786[1-261] [Mycoplasma penetrans]		Cluster 26:
gid=33865758[78-283] [Synechococcus sp. WH 8102]
Cluster 27:
gid=23042316[1-287] [Trichodesmium erythraeum IMS101]		Cluster 28:
gid=28898664[1-256] [Vibrio parahaemolyticus RIMD 2210633]
Cluster 29:
gid=23474058[1-176] [Desulfovibrio desulfuricans G20]		Cluster 30:
gid=24212740[1-293] [Leptospira interrogans serovar lai str. 56601]
Cluster 31:
gid=29247168[1-176] [Giardia lamblia ATCC 50803]		Cluster 32:
gid=15645862[1-206] [Helicobacter pylori 26695]
Cluster 33:
gid=32475350[1-270] [Pirellula sp.]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
Motif alignments
Motif 1
 
Motif 2
 
Motif 3
 
Motif 4
 
 
On query region 529 to 644, total sequences extracted for clustering = 83
Cluster 1:
gid=32034113[530-658] [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gid=32030442[484-612] [Haemophilus somnus 2336]
gid=27366602[521-664] [Vibrio vulnificus CMCP6]
gid=16760178[515-644] [Salmonella enterica subsp. enterica serovar Typhi]
gid=16765046[515-644] [Salmonella typhimurium LT2]
gid=33152350[531-659] [Haemophilus ducreyi 35000HP]
gid=16122464[515-644] [Yersinia pestis]
gid=15601560[518-678] [Vibrio cholerae]
gid=559438[515-644] [Escherichia coli]		Cluster 2:
gid=23016311[638-753] [Magnetospirillum magnetotacticum]
gid=16126692[645-760] [Caulobacter crescentus CB15]
gid=17989010[668-783] [Brucella melitensis]
gid=13470989[653-768] [Mesorhizobium loti]
gid=22958235[637-752] [Rhodobacter sphaeroides]
gid=23109294[644-759] [Novosphingobium aromaticivorans]
Cluster 3:
gid=23099883[629-744] [Oceanobacillus iheyensis HTE831]
gid=391901[645-760] [Shigella flexneri]		Cluster 4:
gid=25108920[589-731] [N/A]
gid=15617156[603-745] [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
gid=15607021[566-705] [Aquifex aeolicus]
gid=28198725[586-748] [Xylella fastidiosa Temecula1]
gid=29654398[586-736] [Coxiella burnetii RSA 493]
gid=28210140[569-708] [Clostridium tetani E88]
gid=21242317[558-714] [Xanthomonas axonopodis pv. citri str. 306]
gid=20807463[571-708] [Thermoanaerobacter tengcongensis]
gid=30248367[597-733] [Nitrosomonas europaea ATCC 19718]
gid=15894003[569-730] [Clostridium acetobutylicum]
gid=15643485[569-710] [Thermotoga maritima]
Cluster 5:
gid=26327903[572-687] [Mus musculus]
gid=5262619[517-632] [Homo sapiens]		Cluster 6:
gid=34222082[693-803] [Arabidopsis thaliana]
gid=15241738[672-782] [Arabidopsis thaliana]
Cluster 7:
gid=23474058[677-792] [Desulfovibrio desulfuricans G20]		Cluster 8:
gid=27380223[665-780] [Bradyrhizobium japonicum]
gid=22965039[666-781] [Rhodopseudomonas palustris]
Cluster 9:
gid=23042316[651-766] [Trichodesmium erythraeum IMS101]		Cluster 10:
gid=23467938[689-804] [Haemophilus somnus 129PT]
gid=33151871[670-785] [Haemophilus ducreyi 35000HP]
gid=15603819[685-800] [Pasteurella multocida]
gid=16272801[667-782] [Haemophilus influenzae Rd]
Cluster 11:
gid=29377102[674-789] [Enterococcus faecalis V583]		Cluster 12:
gid=26553786[591-727] [Mycoplasma penetrans]
gid=15673187[525-665] [Lactococcus lactis subsp. lactis]
gid=13357613[587-721] [Ureaplasma urealyticum]
Cluster 13:
gid=34558170[534-653] [Wolinella succinogenes]
gid=15791991[528-644] [Campylobacter jejuni]		Cluster 14:
gid=24212740[614-748] [Leptospira interrogans serovar lai str. 56601]
Cluster 15:
gid=28898664[589-741] [Vibrio parahaemolyticus RIMD 2210633]		Cluster 16:
gid=15835291[577-692] [Chlamydia muridarum]
gid=15605122[579-694] [Chlamydia trachomatis]
Cluster 17:
gid=19703943[567-700] [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]		Cluster 18:
gid=32475350[649-764] [Pirellula sp.]
Cluster 19:
gid=15805382[645-760] [Deinococcus radiodurans]		Cluster 20:
gid=23028335[512-593] [Microbulbifer degradans 2-40]
Cluster 21:
gid=23053471[644-759] [Geobacter metallireducens]		Cluster 22:
gid=23020108[642-757] [Clostridium thermocellum ATCC 27405]
Cluster 23:
gid=21226646[490-605] [Methanosarcina mazei Goe1]		Cluster 24:
gid=33863013[572-688] [Prochlorococcus marinus str. MIT 9313]
gid=33865758[569-682] [Synechococcus sp. WH 8102]
Cluster 25:
gid=23136616[598-750] [Cytophaga hutchinsonii]
gid=34541350[574-702] [Porphyromonas gingivalis W83]
gid=21673344[581-720] [Chlorobium tepidum TLS]
gid=29348486[585-718] [Bacteroides thetaiotaomicron VPI-5482]		Cluster 26:
gid=22298194[550-674] [Thermosynechococcus elongatus BP-1]
gid=17231942[564-686] [Nostoc sp. PCC 7120]
gid=23129239[564-686] [Nostoc punctiforme]
Cluster 27:
gid=15645862[529-644] [Helicobacter pylori 26695]		Cluster 28:
gid=15794292[676-791] [Neisseria meningitidis Z2491]
Cluster 29:
gid=31544662[585-707] [Mycoplasma gallisepticum R]		Cluster 30:
gid=15902922[669-784] [Streptococcus pneumoniae R6]
gid=25011590[686-801] [Streptococcus agalactiae NEM316]
gid=24379988[663-778] [Streptococcus mutans UA159]
Cluster 31:
gid=29247168[624-739] [Giardia lamblia ATCC 50803]		Cluster 32:
gid=23038196[611-726] [Oenococcus oeni MCW]
gid=23024105[659-774] [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
Cluster 33:
gid=15923770[589-675] [Staphylococcus aureus subsp. aureus Mu50]		Cluster 34:
gid=15616115[656-771] [Bacillus halodurans]
gid=16080414[664-779] [Bacillus subtilis]
Cluster 35:
gid=17646566[525-613] [Methylococcus capsulatus]		Cluster 36:
gid=29840007[524-678] [Chlamydophila caviae GPIC]
gid=15618415[524-676] [Chlamydophila pneumoniae CWL029]
Cluster 37:
gid=32266033[501-614] [Helicobacter hepaticus ATCC 51449]		Cluster 38:
gid=23003758[664-779] [Lactobacillus gasseri]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
Motif alignments
Motif 1
 
Motif 2
 
Motif 3
 
Motif 4