Geneva report for
2313611
General information
Genbank ID:
2313611
Gene name:
HP0501
COG
COG0187
Current annotation:
DNA gyrase, sub B (gyrB)
BLOCKS
information
BLOCKS hits
:
IPB001241
:
BLOCKS diagram
PRINTS
information
PRINTS hits
:
PR00418
::
PR01159
::
PR01098
:
PRINTS diagram
Pfam
information (
readme
)
PFAM hits
:
DNA_gyraseB_C
::
Toprim
::
DNA_gyraseB
::
HATPase_c
:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block
readme
)
Clustering on variable region
(
hierachical clustering
,average percent identity between clusters < 30%)
On query region 558 to 697, total sequences extracted for clustering = 143
Cluster 1:
gid=21240778
[571-738] [Xanthomonas axonopodis pv. citri str. 306]
gid=21229482
[566-740] [Xanthomonas campestris pv. campestris str. ATCC 33913]
gid=22993815
[567-740] [Xylella fastidiosa Dixon]
Cluster 2:
gid=23054293
[563-721] [Geobacter metallireducens]
Cluster 3:
gid=15606321
[561-718] [Aquifex aeolicus]
Cluster 4:
gid=33864631
[579-655] [Synechococcus sp. WH 8102]
gid=22405936
[605-677] [Ferroplasma acidarmanus]
gid=22971553
[562-636] [Chloroflexus aurantiacus]
gid=462227
[565-640] [N/A]
gid=23050010
[560-633] [Methanosarcina barkeri]
gid=31791182
[634-714] [Mycobacterium bovis subsp. bovis AF2122/97]
gid=21309845
[575-648] [Peanut witches'-broom phytoplasma]
gid=29830864
[613-692] [Streptomyces avermitilis MA-4680]
gid=10644698
[562-636] [Brachyspira hyodysenteriae]
gid=23043187
[814-891] [Trichodesmium erythraeum IMS101]
gid=15672887
[572-651] [Lactococcus lactis subsp. lactis]
gid=13878524
[561-632] [N/A]
gid=24212705
[566-639] [Leptospira interrogans serovar lai str. 56601]
gid=22536796
[571-650] [Streptococcus agalactiae 2603V/R]
gid=7387745
[573-638] [N/A]
gid=21228521
[561-634] [Methanosarcina mazei Goe1]
gid=18308988
[563-638] [Clostridium perfringens]
gid=33241245
[582-658] [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gid=4033400
[565-638] [N/A]
gid=25026562
[607-687] [Corynebacterium efficiens YS-314]
gid=30018283
[568-642] [Bacillus cereus ATCC 14579]
gid=27466922
[570-643] [Staphylococcus epidermidis ATCC 12228]
gid=21222282
[607-686] [Streptomyces coelicolor A3(2)]
gid=28569044
[598-677] [Streptomyces rishiriensis]
gid=23016964
[566-649] [Thermobifida fusca]
gid=9622089
[562-634] [Thermus thermophilus]
gid=23024059
[596-672] [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
gid=13812265
[604-684] [Guillardia theta]
gid=1170146
[574-648] [N/A]
gid=11270953
[562-637] [imported]
gid=15639990
[564-637] [Treponema pallidum]
gid=28627816
[598-677] [Streptomyces roseochromogenes subsp. oscitans]
gid=23036988
[576-652] [Oenococcus oeni MCW]
gid=6006289
[578-653] [Bacteroides fragilis]
gid=121889
[565-639] [N/A]
gid=20090442
[561-634] [Methanosarcina acetivorans str. C2A]
gid=19551255
[604-684] [Corynebacterium glutamicum ATCC 13032]
gid=22991526
[570-648] [Enterococcus faecium]
gid=24379696
[571-650] [Streptococcus mutans UA159]
gid=33862394
[579-655] [Prochlorococcus marinus str. MIT 9313]
gid=23465218
[616-696] [Bifidobacterium longum NCC2705]
gid=33862190
[579-655] [Prochlorococcus marinus subsp. pastoris str. CCMP1378]
gid=23135434
[576-652] [Cytophaga hutchinsonii]
gid=29348838
[578-653] [Bacteroides thetaiotaomicron VPI-5482]
gid=23020027
[566-641] [Clostridium thermocellum ATCC 27405]
gid=2118337
[563-636] [N/A]
gid=28209863
[562-637] [Clostridium tetani E88]
gid=26553455
[576-649] [Mycoplasma penetrans]
gid=33469292
[571-644] [Staphylococcus haemolyticus]
gid=16799085
[572-646] [Listeria innocua]
gid=12044853
[577-650] [Mycoplasma genitalium]
gid=28376979
[574-648] [Lactobacillus plantarum WCFS1]
gid=1708090
[605-684] [N/A]
gid=13431552
[597-677] [N/A]
gid=19745824
[571-650] [Streptococcus pyogenes MGAS8232]
gid=25019687
[569-645] [Synechococcus sp. PCC 7942]
gid=20806552
[581-654] [Thermoanaerobacter tengcongensis]
gid=23097461
[567-641] [Oceanobacillus iheyensis HTE831]
gid=15612569
[563-637] [Bacillus halodurans]
gid=22298189
[564-640] [Thermosynechococcus elongatus BP-1]
gid=31544928
[575-648] [Mycoplasma gallisepticum R]
gid=28492972
[569-649] [Tropheryma whipplei str. Twist]
gid=1226021
[595-675] [Mycobacterium smegmatis]
gid=23003074
[581-655] [Lactobacillus gasseri]
gid=23128092
[569-645] [Nostoc punctiforme]
gid=15839377
[606-686] [Mycobacterium tuberculosis CDC1551]
gid=15826870
[598-678] [Mycobacterium leprae]
gid=21397975
[566-640] [Bacillus anthracis A2012]
gid=603237
[573-646] [N/A]
gid=15829210
[570-644] [Mycoplasma pulmonis]
gid=15900699
[569-648] [Streptococcus pneumoniae TIGR4]
gid=21675071
[569-647] [Chlorobium tepidum TLS]
gid=16077074
[564-638] [Bacillus subtilis]
gid=16802054
[572-646] [Listeria monocytogenes EGD-e]
gid=15922995
[571-644] [Staphylococcus aureus subsp. aureus Mu50]
gid=17232757
[569-645] [Nostoc sp. PCC 7120]
gid=29374666
[564-642] [Enterococcus faecalis V583]
gid=13357637
[577-650] [Ureaplasma urealyticum]
Cluster 5:
gid=34495458
[533-698] [Chromobacterium violaceum ATCC 12472]
gid=15676138
[560-722] [Neisseria meningitidis MC58]
gid=33598882
[571-743] [Bordetella parapertussis]
gid=3550425
[560-723] [Methylovorus sp. SS1]
gid=30248034
[572-733] [Nitrosomonas europaea ATCC 19718]
gid=33603961
[571-743] [Bordetella bronchiseptica]
gid=17548157
[593-768] [Ralstonia solanacearum]
gid=33591698
[571-743] [Bordetella pertussis]
gid=482597
[546-708] [N/A]
gid=22984295
[576-749] [Burkholderia fungorum]
Cluster 6:
gid=23000011
[571-736] [Magnetococcus sp. MC-1]
Cluster 7:
gid=28896788
[556-729] [Vibrio parahaemolyticus RIMD 2210633]
gid=24371611
[562-731] [Shewanella oneidensis MR-1]
gid=23469355
[559-737] [Pseudomonas syringae pv. syringae B728a]
gid=26250440
[558-731] [Escherichia coli CFT073]
gid=29653368
[561-735] [Coxiella burnetii RSA 493]
gid=24114991
[558-731] [Shigella flexneri 2a str. 301]
gid=23104602
[563-741] [Azotobacter vinelandii]
gid=23027048
[558-734] [Microbulbifer degradans 2-40]
gid=23467985
[559-732] [Haemophilus somnus 129PT]
gid=33152675
[555-737] [Haemophilus ducreyi 35000HP]
gid=121893
[560-730] [N/A]
gid=15603341
[555-731] [Pasteurella multocida]
gid=16762490
[557-728] [Salmonella enterica subsp. enterica serovar Typhi]
gid=16272510
[558-731] [Haemophilus influenzae Rd]
gid=23307486
[558-730] [Shewanella violacea]
gid=15595202
[560-738] [Pseudomonas aeruginosa PA01]
gid=15640047
[556-731] [Vibrio cholerae]
gid=27364430
[558-729] [Vibrio vulnificus CMCP6]
gid=1546916
[557-730] [Salmonella typhimurium]
gid=16124203
[555-730] [Yersinia pestis]
Cluster 8:
gid=15963765
[573-735] [Sinorhizobium meliloti]
gid=27375934
[574-736] [Bradyrhizobium japonicum]
gid=23501039
[572-734] [Brucella suis 1330]
gid=13474326
[581-747] [Mesorhizobium loti]
gid=16124415
[578-733] [Caulobacter crescentus CB15]
gid=22965523
[564-729] [Rhodospirillum rubrum]
gid=15887371
[578-740] [Agrobacterium tumefaciens]
gid=22962001
[576-738] [Rhodopseudomonas palustris]
gid=23016662
[579-741] [Magnetospirillum magnetotacticum]
gid=22956830
[594-754] [Rhodobacter sphaeroides]
Cluster 9:
gid=15835080
[573-729] [Chlamydia muridarum]
gid=15604910
[574-729] [Chlamydia trachomatis]
gid=15618195
[574-727] [Chlamydophila pneumoniae CWL029]
gid=29840266
[574-731] [Chlamydophila caviae GPIC]
Cluster 10:
gid=15604433
[571-734] [Rickettsia prowazekii]
gid=34581483
[571-734] [Rickettsia sibirica]
gid=15892807
[571-734] [EC:5.99.1.3]
Cluster 11:
gid=2827016
[561-727] [Buchnera aphidicola]
gid=15616640
[561-728] [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
Cluster 12:
gid=32266626
[557-696] [Helicobacter hepaticus ATCC 51449]
gid=15791402
[556-693] [Campylobacter jejuni]
gid=15645128
[558-697] [Helicobacter pylori 26695]
gid=34556461
[557-696] [Wolinella succinogenes]
Cluster 13:
gid=33519500
[562-730] [Candidatus Blochmannia floridanus]
Cluster 14:
gid=23110554
[652-834] [Novosphingobium aromaticivorans]
gid=6580765
[570-740] [Zymomonas mobilis]
Cluster 15:
gid=23473196
[563-721] [Desulfovibrio desulfuricans G20]
Cluster 16:
gid=4033395
[572-739] [N/A]
Cluster 17:
gid=32490765
[561-729] [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis]
Short motifs reported by
MEME
(
readme
)
MEME motif diagram in this region
no motif infomation available
Motif alignments
no diagam information available