Geneva report for 2313410
General information
Genbank ID: 2313410
Gene name:HP0317
COG-
Current annotation:outer membrane protein (omp9)
BLOCKS information
BLOCKS hitsno blocks match
PRINTS information
PRINTS hitsno prints match
Pfam information (readme)
PFAM hits:HP_OMP:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block readme)


Clustering on variable region (hierachical clustering,average percent identity between clusters < 30%)
On query region 186 to 269, total sequences extracted for clustering = 41
Cluster 1:
gid=33383261[176-244] [Helicobacter pylori]
gid=33383259[177-242] [Helicobacter pylori]
gid=33383247[176-244] [Helicobacter pylori]
gid=33383273[178-245] [Helicobacter pylori]
gid=33383269[176-244] [Helicobacter pylori]
gid=33383257[176-242] [Helicobacter pylori]
gid=33383265[177-245] [Helicobacter pylori]
gid=33383277[178-245] [Helicobacter pylori]
gid=33383253[178-244] [Helicobacter pylori]
gid=33383267[176-242] [Helicobacter pylori]
gid=33383279[177-242] [Helicobacter pylori]
gid=33383271[178-246] [Helicobacter pylori]
gid=33383245[186-254] [Helicobacter pylori]
gid=33383263[177-245] [Helicobacter pylori]
gid=33383255[176-242] [Helicobacter pylori]
gid=33383249[177-245] [Helicobacter pylori]
gid=33383251[177-243] [Helicobacter pylori]
gid=33383275[178-247] [Helicobacter pylori]
gid=33383281[186-254] [Helicobacter pylori]
gid=33383243[176-242] [Helicobacter pylori]
Cluster 2:
gid=33383313[188-272] [Helicobacter pylori]
gid=33383287[188-275] [Helicobacter pylori]
gid=33383317[188-274] [Helicobacter pylori]
gid=33383293[188-274] [Helicobacter pylori]
gid=33383301[188-275] [Helicobacter pylori]
gid=33383297[188-272] [Helicobacter pylori]
gid=33383305[188-274] [Helicobacter pylori]
gid=33383309[188-275] [Helicobacter pylori]
gid=33383289[188-272] [Helicobacter pylori]
gid=33383311[188-275] [Helicobacter pylori]
gid=33383285[188-278] [Helicobacter pylori]
gid=33383315[188-275] [Helicobacter pylori]
gid=33383291[188-275] [Helicobacter pylori]
gid=33383321[187-275] [Helicobacter pylori]
gid=33383319[188-275] [Helicobacter pylori]
gid=33383303[188-276] [Helicobacter pylori]
gid=33383299[188-272] [Helicobacter pylori]
gid=33383283[188-273] [Helicobacter pylori]
gid=33383295[188-277] [Helicobacter pylori]
gid=33383307[188-275] [Helicobacter pylori]
Cluster 3:
gid=15644945[186-269] [Helicobacter pylori 26695]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
no motif infomation available
Motif alignments
no diagam information available