Geneva report for 2313329
General information
Genbank ID: 2313329
Gene name:HP0238
COGCOG0442
Current annotation:prolyl-tRNA synthetase (proS)
BLOCKS information
BLOCKS hitsno blocks match
PRINTS information
PRINTS hits:PR01046:
PRINTS diagram
Pfam information (readme)
PFAM hits:TRNA-synt_2b::YbaK::HGTP_anticodon:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block readme)


Clustering on variable region (hierachical clustering,average percent identity between clusters < 30%)
On query region 238 to 390, total sequences extracted for clustering = 108
Cluster 1:
gid=33598297[237-388] [Bordetella parapertussis]
gid=22998902[238-385] [Magnetococcus sp. MC-1]
gid=34496029[238-387] [Chromobacterium violaceum ATCC 12472]
gid=33603207[237-388] [Bordetella bronchiseptica]
gid=27365189[238-385] [Vibrio vulnificus CMCP6]
gid=15643280[238-382] [Thermotoga maritima]
gid=33152900[238-388] [Haemophilus ducreyi 35000HP]
gid=17547535[238-386] [Ralstonia solanacearum]
gid=16121369[238-385] [Yersinia pestis]
gid=15900198[276-419] [Streptococcus pneumoniae TIGR4]
gid=16759234[238-385] [Salmonella enterica subsp. enterica serovar Typhi]
gid=30061751[238-385] [Shigella flexneri 2a str. 2457T]
gid=23002914[238-382] [Lactobacillus gasseri]
gid=28378679[238-382] [Lactobacillus plantarum WCFS1]
gid=30021908[236-382] [Bacillus cereus ATCC 14579]
gid=16803359[236-382] [Listeria monocytogenes EGD-e]
gid=23053502[237-379] [Geobacter metallireducens]
gid=23024040[237-384] [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
gid=33594237[237-388] [Bordetella pertussis]
gid=21911224[276-419] [Streptococcus pyogenes MGAS315]
gid=26246144[256-403] [Escherichia coli CFT073]
gid=15674109[276-419] [Lactococcus lactis subsp. lactis]
gid=28212194[238-380] [Clostridium tetani E88]
gid=15896426[238-385] [Clostridium acetobutylicum]
gid=23467171[238-383] [Haemophilus somnus 129PT]
gid=15605873[238-382] [Aquifex aeolicus]
gid=19704979[238-382] [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gid=15924253[238-381] [Staphylococcus aureus subsp. aureus Mu50]
gid=15614982[236-381] [Bacillus halodurans]
gid=16078720[238-382] [Bacillus subtilis]
gid=29653442[240-384] [Coxiella burnetii RSA 493]
gid=16272670[238-388] [Haemophilus influenzae Rd]
gid=21244292[255-416] [Xanthomonas axonopodis pv. citri str. 306]
gid=21230114[236-397] [Xanthomonas campestris pv. campestris str. ATCC 33913]
gid=29376876[238-382] [Enterococcus faecalis V583]
gid=23474565[237-381] [Desulfovibrio desulfuricans G20]
gid=27467857[238-381] [Staphylococcus epidermidis ATCC 12228]
gid=22976786[279-427] [Ralstonia metallidurans]
gid=15837047[254-398] [Xylella fastidiosa 9a5c]
gid=32035109[238-383] [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gid=20808685[238-382] [Thermoanaerobacter tengcongensis]
gid=23102778[254-399] [Azotobacter vinelandii]
gid=24374667[238-384] [Shewanella oneidensis MR-1]
gid=22984654[238-387] [Burkholderia fungorum]
gid=30249296[238-382] [Nitrosomonas europaea ATCC 19718]
gid=21401802[236-382] [Bacillus anthracis A2012]
gid=28899107[238-390] [Vibrio parahaemolyticus RIMD 2210633]
gid=28871133[238-383] [Pseudomonas syringae pv. tomato str. DC3000]
gid=15603235[238-384] [Pasteurella multocida]
gid=15596153[238-383] [Pseudomonas aeruginosa PA01]
gid=15677205[236-383] [Neisseria meningitidis MC58]
gid=23060847[238-383] [Pseudomonas fluorescens PfO-1]
gid=24380149[276-419] [Streptococcus mutans UA159]
gid=16800424[238-382] [Listeria innocua]
gid=15640891[238-390] [Vibrio cholerae]
gid=23037963[237-384] [Oenococcus oeni MCW]
gid=18311410[238-380] [Clostridium perfringens]
gid=25011939[276-419] [Streptococcus agalactiae NEM316]
gid=26987940[238-383] [Pseudomonas putida KT2440]
Cluster 2:
gid=33239959[241-430] [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gid=33866303[241-426] [Synechococcus sp. WH 8102]
gid=23042809[239-431] [Trichodesmium erythraeum IMS101]
gid=23125004[241-426] [Nostoc punctiforme]
gid=33863527[241-406] [Prochlorococcus marinus str. MIT 9313]
gid=33861065[242-427] [Prochlorococcus marinus subsp. pastoris str. CCMP1378]
gid=16330600[255-443] [Synechocystis sp. PCC 6803]
gid=17232545[241-410] [Nostoc sp. PCC 7120]
gid=22298319[239-431] [Thermosynechococcus elongatus BP-1]
Cluster 3:
gid=28278090[278-430] [Xenopus laevis]
gid=34303926[287-439] [Homo sapiens]
gid=27715407[287-439] [Mus musculus]
gid=26986579[287-439] [Mus musculus]
Cluster 4:
gid=24215989[234-382] [Leptospira interrogans serovar lai str. 56601]
Cluster 5:
gid=14590847[154-263] [Pyrococcus horikoshii]
gid=14521178[154-263] [Pyrococcus abyssi]
Cluster 6:
gid=32418324[328-485] [Neurospora crassa]
Cluster 7:
gid=20092682[243-395] [Methanosarcina acetivorans str. C2A]
gid=23052062[243-395] [Methanosarcina barkeri]
gid=20094665[248-400] [Methanopyrus kandleri AV19]
gid=21226809[243-395] [Methanosarcina mazei Goe1]
Cluster 8:
gid=6320931[244-366] [Saccharomyces cerevisiae]
gid=2501044[242-360] [N/A]
Cluster 9:
gid=23466273[218-412] [Bifidobacterium longum NCC2705]
gid=21224048[244-387] [Streptomyces coelicolor A3(2)]
gid=19553198[240-400] [Corynebacterium glutamicum ATCC 13032]
gid=31794022[240-396] [Mycobacterium bovis subsp. bovis AF2122/97]
gid=23019276[362-519] [Thermobifida fusca]
gid=29829100[242-384] [Streptomyces avermitilis MA-4680]
gid=25028444[236-400] [Corynebacterium efficiens YS-314]
gid=15842386[236-392] [Mycobacterium tuberculosis CDC1551]
Cluster 10:
gid=15791904[239-385] [Campylobacter jejuni]
gid=15644866[238-390] [Helicobacter pylori 26695]
gid=34557905[238-388] [Wolinella succinogenes]
gid=32267225[238-401] [Helicobacter hepaticus ATCC 51449]
Cluster 11:
gid=28572736[225-425] [Tropheryma whipplei TW08/27]
Cluster 12:
gid=15835287[240-409] [Chlamydia muridarum]
gid=15836031[238-384] [Chlamydophila pneumoniae J138]
gid=29840011[240-390] [Chlamydophila caviae GPIC]
gid=15605118[240-390] [Chlamydia trachomatis]
Cluster 13:
gid=15639153[234-427] [Treponema pallidum]
Cluster 14:
gid=22959284[376-528] [Rhodobacter sphaeroides]
Cluster 15:
gid=32491346[210-391] [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis]
Cluster 16:
gid=23483805[373-525] [Plasmodium yoelii yoelii]
gid=23613770[315-467] [Plasmodium falciparum 3D7]
Cluster 17:
gid=33519754[210-408] [Candidatus Blochmannia floridanus]
Cluster 18:
gid=28829422[287-498] [Dictyostelium discoideum]
Cluster 19:
gid=21672515[237-384] [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gid=15616855[237-385] [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
no motif infomation available
Motif alignments
no diagam information available