Geneva report for
2313329
General information
Genbank ID:
2313329
Gene name:
HP0238
COG
COG0442
Current annotation:
prolyl-tRNA synthetase (proS)
BLOCKS
information
BLOCKS hits
no blocks match
PRINTS
information
PRINTS hits
:
PR01046
:
PRINTS diagram
Pfam
information (
readme
)
PFAM hits
:
TRNA-synt_2b
::
YbaK
::
HGTP_anticodon
:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block
readme
)
Clustering on variable region
(
hierachical clustering
,average percent identity between clusters < 30%)
On query region 238 to 390, total sequences extracted for clustering = 108
Cluster 1:
gid=33598297
[237-388] [Bordetella parapertussis]
gid=22998902
[238-385] [Magnetococcus sp. MC-1]
gid=34496029
[238-387] [Chromobacterium violaceum ATCC 12472]
gid=33603207
[237-388] [Bordetella bronchiseptica]
gid=27365189
[238-385] [Vibrio vulnificus CMCP6]
gid=15643280
[238-382] [Thermotoga maritima]
gid=33152900
[238-388] [Haemophilus ducreyi 35000HP]
gid=17547535
[238-386] [Ralstonia solanacearum]
gid=16121369
[238-385] [Yersinia pestis]
gid=15900198
[276-419] [Streptococcus pneumoniae TIGR4]
gid=16759234
[238-385] [Salmonella enterica subsp. enterica serovar Typhi]
gid=30061751
[238-385] [Shigella flexneri 2a str. 2457T]
gid=23002914
[238-382] [Lactobacillus gasseri]
gid=28378679
[238-382] [Lactobacillus plantarum WCFS1]
gid=30021908
[236-382] [Bacillus cereus ATCC 14579]
gid=16803359
[236-382] [Listeria monocytogenes EGD-e]
gid=23053502
[237-379] [Geobacter metallireducens]
gid=23024040
[237-384] [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
gid=33594237
[237-388] [Bordetella pertussis]
gid=21911224
[276-419] [Streptococcus pyogenes MGAS315]
gid=26246144
[256-403] [Escherichia coli CFT073]
gid=15674109
[276-419] [Lactococcus lactis subsp. lactis]
gid=28212194
[238-380] [Clostridium tetani E88]
gid=15896426
[238-385] [Clostridium acetobutylicum]
gid=23467171
[238-383] [Haemophilus somnus 129PT]
gid=15605873
[238-382] [Aquifex aeolicus]
gid=19704979
[238-382] [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
gid=15924253
[238-381] [Staphylococcus aureus subsp. aureus Mu50]
gid=15614982
[236-381] [Bacillus halodurans]
gid=16078720
[238-382] [Bacillus subtilis]
gid=29653442
[240-384] [Coxiella burnetii RSA 493]
gid=16272670
[238-388] [Haemophilus influenzae Rd]
gid=21244292
[255-416] [Xanthomonas axonopodis pv. citri str. 306]
gid=21230114
[236-397] [Xanthomonas campestris pv. campestris str. ATCC 33913]
gid=29376876
[238-382] [Enterococcus faecalis V583]
gid=23474565
[237-381] [Desulfovibrio desulfuricans G20]
gid=27467857
[238-381] [Staphylococcus epidermidis ATCC 12228]
gid=22976786
[279-427] [Ralstonia metallidurans]
gid=15837047
[254-398] [Xylella fastidiosa 9a5c]
gid=32035109
[238-383] [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gid=20808685
[238-382] [Thermoanaerobacter tengcongensis]
gid=23102778
[254-399] [Azotobacter vinelandii]
gid=24374667
[238-384] [Shewanella oneidensis MR-1]
gid=22984654
[238-387] [Burkholderia fungorum]
gid=30249296
[238-382] [Nitrosomonas europaea ATCC 19718]
gid=21401802
[236-382] [Bacillus anthracis A2012]
gid=28899107
[238-390] [Vibrio parahaemolyticus RIMD 2210633]
gid=28871133
[238-383] [Pseudomonas syringae pv. tomato str. DC3000]
gid=15603235
[238-384] [Pasteurella multocida]
gid=15596153
[238-383] [Pseudomonas aeruginosa PA01]
gid=15677205
[236-383] [Neisseria meningitidis MC58]
gid=23060847
[238-383] [Pseudomonas fluorescens PfO-1]
gid=24380149
[276-419] [Streptococcus mutans UA159]
gid=16800424
[238-382] [Listeria innocua]
gid=15640891
[238-390] [Vibrio cholerae]
gid=23037963
[237-384] [Oenococcus oeni MCW]
gid=18311410
[238-380] [Clostridium perfringens]
gid=25011939
[276-419] [Streptococcus agalactiae NEM316]
gid=26987940
[238-383] [Pseudomonas putida KT2440]
Cluster 2:
gid=33239959
[241-430] [Prochlorococcus marinus subsp. marinus str. CCMP1375]
gid=33866303
[241-426] [Synechococcus sp. WH 8102]
gid=23042809
[239-431] [Trichodesmium erythraeum IMS101]
gid=23125004
[241-426] [Nostoc punctiforme]
gid=33863527
[241-406] [Prochlorococcus marinus str. MIT 9313]
gid=33861065
[242-427] [Prochlorococcus marinus subsp. pastoris str. CCMP1378]
gid=16330600
[255-443] [Synechocystis sp. PCC 6803]
gid=17232545
[241-410] [Nostoc sp. PCC 7120]
gid=22298319
[239-431] [Thermosynechococcus elongatus BP-1]
Cluster 3:
gid=28278090
[278-430] [Xenopus laevis]
gid=34303926
[287-439] [Homo sapiens]
gid=27715407
[287-439] [Mus musculus]
gid=26986579
[287-439] [Mus musculus]
Cluster 4:
gid=24215989
[234-382] [Leptospira interrogans serovar lai str. 56601]
Cluster 5:
gid=14590847
[154-263] [Pyrococcus horikoshii]
gid=14521178
[154-263] [Pyrococcus abyssi]
Cluster 6:
gid=32418324
[328-485] [Neurospora crassa]
Cluster 7:
gid=20092682
[243-395] [Methanosarcina acetivorans str. C2A]
gid=23052062
[243-395] [Methanosarcina barkeri]
gid=20094665
[248-400] [Methanopyrus kandleri AV19]
gid=21226809
[243-395] [Methanosarcina mazei Goe1]
Cluster 8:
gid=6320931
[244-366] [Saccharomyces cerevisiae]
gid=2501044
[242-360] [N/A]
Cluster 9:
gid=23466273
[218-412] [Bifidobacterium longum NCC2705]
gid=21224048
[244-387] [Streptomyces coelicolor A3(2)]
gid=19553198
[240-400] [Corynebacterium glutamicum ATCC 13032]
gid=31794022
[240-396] [Mycobacterium bovis subsp. bovis AF2122/97]
gid=23019276
[362-519] [Thermobifida fusca]
gid=29829100
[242-384] [Streptomyces avermitilis MA-4680]
gid=25028444
[236-400] [Corynebacterium efficiens YS-314]
gid=15842386
[236-392] [Mycobacterium tuberculosis CDC1551]
Cluster 10:
gid=15791904
[239-385] [Campylobacter jejuni]
gid=15644866
[238-390] [Helicobacter pylori 26695]
gid=34557905
[238-388] [Wolinella succinogenes]
gid=32267225
[238-401] [Helicobacter hepaticus ATCC 51449]
Cluster 11:
gid=28572736
[225-425] [Tropheryma whipplei TW08/27]
Cluster 12:
gid=15835287
[240-409] [Chlamydia muridarum]
gid=15836031
[238-384] [Chlamydophila pneumoniae J138]
gid=29840011
[240-390] [Chlamydophila caviae GPIC]
gid=15605118
[240-390] [Chlamydia trachomatis]
Cluster 13:
gid=15639153
[234-427] [Treponema pallidum]
Cluster 14:
gid=22959284
[376-528] [Rhodobacter sphaeroides]
Cluster 15:
gid=32491346
[210-391] [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis]
Cluster 16:
gid=23483805
[373-525] [Plasmodium yoelii yoelii]
gid=23613770
[315-467] [Plasmodium falciparum 3D7]
Cluster 17:
gid=33519754
[210-408] [Candidatus Blochmannia floridanus]
Cluster 18:
gid=28829422
[287-498] [Dictyostelium discoideum]
Cluster 19:
gid=21672515
[237-384] [Buchnera aphidicola str. Sg (Schizaphis graminum)]
gid=15616855
[237-385] [Buchnera aphidicola str. APS (Acyrthosiphon pisum)]
Short motifs reported by
MEME
(
readme
)
MEME motif diagram in this region
no motif infomation available
Motif alignments
no diagam information available