Geneva report for
2313124
General information
Genbank ID:
2313124
Gene name:
HP0051
COG
COG0270
Current annotation:
cytosine specific DNA methyltransferase (DDEM)
BLOCKS
information
BLOCKS hits
:
IPB001525
::
IPB002857
:
BLOCKS diagram
PRINTS
information
PRINTS hits
:
PR00105
:
PRINTS diagram
Pfam
information (
readme
)
PFAM hits
:
DNA_methylase
:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block
readme
)
Clustering on variable region
(
hierachical clustering
,average percent identity between clusters < 30%)
On query region 173 to 298, total sequences extracted for clustering = 72
Cluster 1:
gid=30019096
[180-295] [Bacillus cereus ATCC 14579]
Cluster 2:
gid=7433507
[231-327] [N/A]
gid=462657
[240-334] [N/A]
gid=17863973
[255-401] [Bacteroides sp. 139]
gid=1657420
[231-327] [Salmonella enteritidis]
gid=23466029
[176-271] [Bifidobacterium longum NCC2705]
gid=1709152
[164-259] [N/A]
gid=127471
[165-290] [N/A]
gid=32470131
[231-327] [Klebsiella pneumoniae]
Cluster 3:
gid=15897209
[173-261] [Sulfolobus solfataricus]
gid=20094956
[170-259] [Methanopyrus kandleri AV19]
gid=15920534
[171-259] [Sulfolobus tokodaii]
Cluster 4:
gid=127486
[263-371] [N/A]
gid=22256926
[239-352] [N/A]
Cluster 5:
gid=29376841
[117-273] [Enterococcus faecalis V583]
gid=22993476
[166-322] [Enterococcus faecium]
gid=15088756
[167-332] [Streptococcus pneumoniae bacteriophage MM1]
Cluster 6:
gid=5420107
[163-316] [Streptococcus thermophilus]
gid=23100788
[196-293] [Oceanobacillus iheyensis HTE831]
gid=15894780
[233-358] [Clostridium acetobutylicum]
gid=1171044
[164-315] [N/A]
Cluster 7:
gid=16125285
[173-272] [Caulobacter crescentus CB15]
gid=17548155
[174-271] [Ralstonia solanacearum]
gid=26990694
[199-292] [Pseudomonas putida KT2440]
Cluster 8:
gid=16272974
[162-287] [Haemophilus influenzae Rd]
Cluster 9:
gid=23040897
[173-317] [Trichodesmium erythraeum IMS101]
gid=1709171
[175-309] [N/A]
gid=34014717
[174-328] [Acidocella facilis]
gid=23125704
[180-333] [Nostoc punctiforme]
Cluster 10:
gid=9630267
[261-386] [Bacteriophage SPBc2]
Cluster 11:
gid=127459
[194-303] [N/A]
Cluster 12:
gid=15793432
[169-293] [Neisseria meningitidis Z2491]
Cluster 13:
gid=12084381
[169-272] [N/A]
Cluster 14:
gid=15644682
[173-298] [Helicobacter pylori 26695]
gid=23428398
[170-295] [Moraxella nonliquefaciens]
Cluster 15:
gid=216171
[169-294] [N/A]
Cluster 16:
gid=39987
[216-314] [Bacillus sphaericus]
gid=1127162
[160-271] [N/A]
gid=127429
[247-343] [N/A]
gid=27733906
[235-334] [Leuconostoc citreum]
gid=462651
[160-274] [N/A]
Cluster 17:
gid=11138959
[199-350] [Streptomyces griseus]
Cluster 18:
gid=26554428
[177-302] [Mycoplasma penetrans]
Cluster 19:
gid=127420
[167-292] [N/A]
Cluster 20:
gid=2599488
[183-274] [Flavobacterium aquatile]
Cluster 21:
gid=1709158
[215-314] [N/A]
gid=2330911
[175-275] [Neisseria gonorrhoeae]
Cluster 22:
gid=9622224
[164-307] [Bacillus sp. LU11]
Cluster 23:
gid=22995512
[175-273] [Xylella fastidiosa Dixon]
Cluster 24:
gid=462647
[184-289] [N/A]
gid=19552978
[164-268] [Corynebacterium glutamicum ATCC 13032]
Cluster 25:
gid=14330659
[175-293] [Klebsiella pneumoniae]
Cluster 26:
gid=127435
[166-291] [N/A]
Cluster 27:
gid=15678523
[213-356] [Methanothermobacter thermautotrophicus]
gid=22405388
[186-330] [Ferroplasma acidarmanus]
gid=21226380
[218-369] [Methanosarcina mazei Goe1]
Cluster 28:
gid=18202008
[189-324] [N/A]
Cluster 29:
gid=16331413
[177-332] [Synechocystis sp. PCC 6803]
Cluster 30:
gid=15616070
[164-264] [Bacillus halodurans]
Cluster 31:
gid=24527986
[162-251] [Escherichia coli]
Cluster 32:
gid=4033737
[228-318] [Nostoc sp. ATCC 29411]
gid=4033740
[228-318] [Nostoc sp. ATCC 29106]
Cluster 33:
gid=127439
[169-307] [N/A]
gid=17232307
[179-331] [Nostoc sp. PCC 7120]
gid=2894387
[172-310] [Bacillus pumilus]
Cluster 34:
gid=30523050
[171-275] [Arthrobacter sp. S]
Cluster 35:
gid=22538008
[167-292] [Streptococcus agalactiae 2603V/R]
Cluster 36:
gid=34451619
[235-353] [Thermus sp. R]
Cluster 37:
gid=2760954
[171-309] [Enterobacter aerogenes]
Cluster 38:
gid=2120835
[169-325] [N/A]
Cluster 39:
gid=15966901
[201-358] [Sinorhizobium meliloti]
Cluster 40:
gid=628257
[175-264] [N/A]
Short motifs reported by
MEME
(
readme
)
MEME motif diagram in this region
Motif alignments
Motif 1
Motif 2
Motif 3