Geneva report for 1790405
General information
Genbank ID: 1790405
Gene name:btuB(synonym b3966)
COGCOG1629
Current annotation:outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23
BLOCKS information
BLOCKS hits:IPB000531:
BLOCKS diagram
PRINTS information
PRINTS hitsno prints match
Pfam information (readme)
PFAM hits:TonB_boxC:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block readme)


Clustering on variable region (hierachical clustering,average percent identity between clusters < 30%)
On query region 158 to 357, total sequences extracted for clustering = 47
Cluster 1:
gid=15596468[154-352] [Pseudomonas aeruginosa PA01]
gid=32041298[144-342] [Pseudomonas aeruginosa UCBPP-PA14]
gid=21243920[165-370] [Xanthomonas axonopodis pv. citri str. 306]
gid=21232497[163-370] [Xanthomonas campestris pv. campestris str. ATCC 33913]
gid=30248647[158-374] [Nitrosomonas europaea ATCC 19718]		Cluster 2:
gid=33597083[179-452] [Bordetella parapertussis]
gid=33593839[179-452] [Bordetella pertussis]
gid=33600927[156-429] [Bordetella bronchiseptica]
Cluster 3:
gid=2765001[158-357] [Citrobacter freundii]
gid=16767394[158-357] [Salmonella typhimurium LT2]
gid=24115260[173-372] [Shigella flexneri 2a str. 301]
gid=16131804[158-357] [Escherichia coli K12]
gid=16762313[158-357] [Salmonella enterica subsp. enterica serovar Typhi]
gid=22124242[191-395] [Yersinia pestis KIM]		Cluster 4:
gid=13774062[187-386] [Plesiomonas shigelloides]
Cluster 5:
gid=30348886[183-467] [Acinetobacter baumannii]		Cluster 6:
gid=22983934[199-402] [Burkholderia fungorum]
gid=17547119[157-383] [Ralstonia solanacearum]
Cluster 7:
gid=34557772[248-447] [Wolinella succinogenes]		Cluster 8:
gid=34495949[161-371] [Chromobacterium violaceum ATCC 12472]
Cluster 9:
gid=22957911[153-396] [Rhodobacter sphaeroides]		Cluster 10:
gid=23502219[160-380] [Brucella suis 1330]
Cluster 11:
gid=23059891[158-374] [Pseudomonas fluorescens PfO-1]
gid=26987263[182-394] [Pseudomonas putida KT2440]
gid=23104584[190-404] [Azotobacter vinelandii]		Cluster 12:
gid=28899712[162-374] [Vibrio parahaemolyticus RIMD 2210633]
Cluster 13:
gid=27364589[156-353] [Vibrio vulnificus CMCP6]		Cluster 14:
gid=24376000[169-388] [Shewanella oneidensis MR-1]
Cluster 15:
gid=17937619[181-380] [Agrobacterium tumefaciens str. C58 (U. Washington)]		Cluster 16:
gid=16125994[168-389] [Caulobacter crescentus CB15]
Cluster 17:
gid=21674568[190-389] [Chlorobium tepidum TLS]		Cluster 18:
gid=33603734[298-497] [Bordetella bronchiseptica]
gid=2199510[240-439] [Campylobacter coli]
gid=15792094[240-439] [Campylobacter jejuni]
Cluster 19:
gid=17230802[242-441] [Nostoc sp. PCC 7120]		Cluster 20:
gid=5199129[170-369] [Bacteroides fragilis]
Cluster 21:
gid=23028532[190-389] [Microbulbifer degradans 2-40]		Cluster 22:
gid=34496946[243-442] [Chromobacterium violaceum ATCC 12472]
Cluster 23:
gid=32266220[193-392] [Helicobacter hepaticus ATCC 51449]		Cluster 24:
gid=23055120[194-393] [Geobacter metallireducens]
Cluster 25:
gid=23107401[181-375] [Novosphingobium aromaticivorans]		Cluster 26:
gid=22968933[195-394] [Rhodospirillum rubrum]
Cluster 27:
gid=32044043[167-366] [Pseudomonas aeruginosa UCBPP-PA14]		Cluster 28:
gid=24217252[201-437] [Leptospira interrogans serovar lai str. 56601]
Cluster 29:
gid=13358848[163-362] [Vibrio mimicus]		Cluster 30:
gid=28868012[200-399] [Pseudomonas syringae pv. tomato str. DC3000]
Cluster 31:
gid=15640186[162-358] [Vibrio cholerae]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
no motif infomation available
Motif alignments
no diagam information available