Geneva report for 1787591
General information
Genbank ID: 1787591
Gene name:b1330(synonym b1330)
COGCOG0668
Current annotation:orf, hypothetical protein
BLOCKS information
BLOCKS hits:IPB001880:
BLOCKS diagram
PRINTS information
PRINTS hitsno prints match
Pfam information (readme)
PFAM hits:MS_channel:
PFAM diagram
Variability information from nongapped BLAST
Variability profile(0-conserved,1-variable,red line - variable region)
Query anchored nongapped BLAST alignment (blue-aligned block, yellow-unaligned block with similar length,grey-unaligned gap-rich block readme)


Clustering on variable region (hierachical clustering,average percent identity between clusters < 30%)
On query region 1 to 111, total sequences extracted for clustering = 42
Cluster 1:
gid=23029778[1-136] [Microbulbifer degradans 2-40]		Cluster 2:
gid=24374851[1-81] [Shewanella oneidensis MR-1]
Cluster 3:
gid=21225287[1-114] [Streptomyces coelicolor A3(2)]
gid=29833757[1-142] [Streptomyces avermitilis MA-4680]
gid=29123010[1-120] [Streptomyces cinnamonensis]		Cluster 4:
gid=16765007[1-111] [Salmonella typhimurium LT2]
gid=16760224[1-111] [Salmonella enterica subsp. enterica serovar Typhi]
gid=24113185[1-111] [Shigella flexneri 2a str. 301]
gid=15801837[1-111] [Escherichia coli O157:H7 EDL933]
Cluster 5:
gid=11499141[1-79] [Archaeoglobus fulgidus DSM 4304]		Cluster 6:
gid=15606178[31-141] [Aquifex aeolicus]
Cluster 7:
gid=18976784[1-139] [Pyrococcus furiosus DSM 3638]
gid=14590251[1-142] [Pyrococcus horikoshii]		Cluster 8:
gid=33240242[1-120] [Prochlorococcus marinus subsp. marinus str. CCMP1375]
Cluster 9:
gid=15668342[1-134] [Methanococcus jannaschii]		Cluster 10:
gid=27367868[1-129] [Vibrio vulnificus CMCP6]
gid=28901356[1-129] [Vibrio parahaemolyticus RIMD 2210633]
Cluster 11:
gid=17548735[1-134] [Ralstonia solanacearum]		Cluster 12:
gid=23475332[1-81] [Desulfovibrio desulfuricans G20]
Cluster 13:
gid=23055011[1-155] [Geobacter metallireducens]		Cluster 14:
gid=23050995[1-90] [Methanosarcina barkeri]
gid=21227992[1-116] [Methanosarcina mazei Goe1]
Cluster 15:
gid=29375711[1-117] [Enterococcus faecalis V583]		Cluster 16:
gid=33863791[1-129] [Prochlorococcus marinus str. MIT 9313]
Cluster 17:
gid=33864341[1-155] [Prochlorococcus marinus str. MIT 9313]		Cluster 18:
gid=15805247[28-138] [Deinococcus radiodurans]
Cluster 19:
gid=15641755[1-78] [Vibrio cholerae]		Cluster 20:
gid=29654382[1-128] [Coxiella burnetii RSA 493]
Cluster 21:
gid=16078029[1-134] [Bacillus subtilis]
gid=15615246[1-144] [Bacillus halodurans]		Cluster 22:
gid=23126432[54-164] [Nostoc punctiforme]
gid=17228691[1-132] [Nostoc sp. PCC 7120]
Cluster 23:
gid=4378179[1-154] [Zymomonas mobilis]		Cluster 24:
gid=7485270[166-276] [N/A]
Cluster 25:
gid=33865330[1-122] [Synechococcus sp. WH 8102]		Cluster 26:
gid=15790239[1-91] [Halobacterium sp. NRC-1]
Cluster 27:
gid=24213692[1-122] [Leptospira interrogans serovar lai str. 56601]		Cluster 28:
gid=18309242[1-139] [Clostridium perfringens]
Cluster 29:
gid=29350096[1-130] [Bacteroides thetaiotaomicron VPI-5482]		Cluster 30:
gid=33861192[1-126] [Prochlorococcus marinus subsp. pastoris str. CCMP1378]
Cluster 31:
gid=28870805[1-147] [Pseudomonas syringae pv. tomato str. DC3000]		Cluster 32:
gid=32476337[1-119] [Pirellula sp.]
Short motifs reported by MEME(readme)
MEME motif diagram in this region
Motif alignments
Motif 1