| GenBank ID | Vdomain number | Current annotation |
| 2313086 | 1 | DNA primase (dnaG) |
| 2313094 | 2 | conserved hypothetical integral membrane protein |
| 2313108 | 1 | ATP-dependent C1p protease (clpA) |
| 2313122 | 2 | transcriptional regulator (hypF) |
| 2313124 | 1 | cytosine specific DNA methyltransferase (DDEM) |
| 2313134 | 5 | delta-1-pyrroline-5-carboxylate dehydrogenase |
| 2313163 | 1 | methyl-accepting chemotaxis transducer (tlpC) |
| 2313167 | 2 | RNA polymerase sigma-70 factor (rpoD) |
| 2313169 | 1 | malonyl coenzyme A-acyl carrier protein transacylase (fabD) |
| 2313178 | 2 | threonine synthase (thrC) |
| 2313179 | 1 | methyl-accepting chemotaxis protein (tlpA) |
| 2313185 | 1 | conserved hypothetical protein |
| 2313186 | 1 | methyl-accepting chemotaxis protein (tlpB) |
| 2313187 | 1 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase (cpdB) |
| 2313199 | 1 | conserved hypothetical protein |
| 2313204 | 1 | H. pylori predicted coding region HP0119 |
| 2313222 | 1 | conserved hypothetical iron-sulfur protein |
| 2313226 | 1 | A/G-specific adenine glycosylase (mutY) |
| 2313249 | 1 | conserved hypothetical protein |
| 2313253 | 1 | collagenase (prtC) |
| 2313255 | 1 | molybdopterin biosynthesis protein (moeA) |
| 2313277 | 1 | conserved hypothetical secreted protein |
| 2313283 | 1 | UDP-3-0-(3-hydroxymyristoyl) glucosamine N-acyltransferase (lpxD) |
| 2313292 | 1 | ATP-binding protein (mpr) |
| 2313300 | 1 | chaperone and heat shock protein C62.5 (htpG) |
| 2313302 | 1 | succinyl-diaminopimelate desuccinylase (dapE) |
| 2313304 | 2 | sodium-dependent transporter (huNaDC-1) |
| 2313305 | 1 | CDP-diglyceride synthetase (cdsA) |
| 2313329 | 1 | prolyl-tRNA synthetase (proS) |
| 2313330 | 2 | glutamyl-tRNA reductase (hemA) |
| 2313331 | 1 | octaprenyl-diphosphate synthase (ispB) |
| 2313340 | 1 | ATP-dependent RNA helicase, DEAD-box family (deaD) |
| 2313352 | 1 | conserved hypothetical integral membrane protein |
| 2313353 | 1 | exonuclease VII, large subunit (xseA) |
| 2313356 | 1 | ATP-dependent protease binding subunit (clpB) |
| 2313364 | 1 | conserved hypothetical ATP-binding protein |
| 2313368 | 1 | guanosine pentaphosphate phosphohydrolase (gppA) |
| 2313369 | 1 | lipopolysaccharide heptosyltransferase-1 (rfaC) |
| 2313381 | 1 | conserved hypothetical protein |
| 2313382 | 2 | cell division protein (ftsH) |
| 2313385 | 2 | para-aminobenzoate synthetase (pabB) |
| 2313396 | 1 | dipeptide ABC transporter, periplasmic dipeptide-binding protein (dppA) |
| 2313401 | 1 | GTP-binding protein (obg) |
| 2313407 | 1 | conserved hypothetical ATP-binding protein |
| 2313408 | 1 | nitrite extrusion protein (narK) |
| 2313410 | 1 | outer membrane protein (omp9) |
| 2313434 | 1 | DNA processing chain A (dprA) |
| 2313452 | 1 | flagellar basal-body M-ring protein (fliF) |
| 2313457 | 1 | short chain alcohol dehydrogenase |
| 2313467 | 1 | spore coat polysaccharide biosynthesis protein C |
| 2313469 | 1 | biotin carboxyl carrier protein (fabE) |
| 2313481 | 1 | cytochrome c biogenesis protein (ycf5) |
| 2313486 | 1 | protoporphyrinogen oxidase (hemK) |
| 2313487 | 1 | zinc-metallo protease (YJR117W) |
| 2313488 | 1 | primosomal protein replication factor (priA) |
| 2313493 | 2 | histidine kinase (cheA) |
| 2313496 | 1 | conserved hypothetical protein |
| 2313498 | 1 | ribosomal protein S1 (rps1) |
| 2313508 | 1 | phenylalanyl-tRNA synthetase, beta subunit (pheT) |
| 2313519 | 1 | conserved hypothetical integral membrane protein |
| 2313521 | 1 | methionyl-tRNA synthetase (metS) |
| 2313524 | 2 | arginine decarboxylase (speA) |
| 2313541 | 1 | IS605 transposase (tnpB) |
| 2313542 | 2 | DNA topoisomerase I (topA) |
| 2313567 | 1 | type I restriction enzyme M protein (hsdM) |
| 2313568 | 5 | type I restriction enzyme R protein (hsdR) |
| 2313574 | 2 | oligoendopeptidase F (pepF) |
| 2313587 | 1 | glutamyl-tRNA synthetase (gltX) |
| 2313605 | 1 | UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) |
| 2313609 | 1 | phospholipase A1 precursor (DR-phospholipase A) |
| 2313611 | 1 | DNA gyrase, sub B (gyrB) |
| 2313617 | 1 | conserved hypothetical secreted protein |
| 2313620 | 1 | dihydrodipicolinate reductase (dapB) |
| 2313639 | 1 | virB11 homolog |
| 2313659 | 4 | cag pathogenicity island protein (cag23) |
| 2313674 | 1 | membrane protein |
| 2313690 | 1 | aminopeptidase a/i (pepA) |
| 2313695 | 1 | signal peptidase I (lepB) |
| 2313705 | 1 | aminodeoxychorismate lyase (pabC) |
| 2313708 | 1 | ferredoxin oxidoreductase, beta subunit |
| 2313710 | 2 | type III restriction enzyme R protein (res) |
| 2313713 | 1 | adenine specific DNA methyltransferase (mod) |
| 2313714 | 1 | penicillin-binding protein 1A (PBP-1A) |
| 2313716 | 1 | hemolysin secretion protein precursor (hylB) |
| 2313717 | 1 | multidrug resistance protein (spaB) |
| 2313726 | 2 | acriflavine resistance protein (acrB) |
| 2313737 | 1 | DNA ligase (lig) |
| 2313742 | 2 | DNA mismatch repair protein (MutS) |
| 2313743 | 2 | UDP-N-acetylmuramate-alanine ligase (murC) |
| 2313744 | 1 | solute-binding signature and mitochondrial signature protein (aspB) |
| 2313754 | 1 | tetrahydrodipicolinate N-succinyltransferase (dapD) |
| 2313750 | 1 | quinone-reactive Ni/Fe hydrogenase, large subunit (hydB) |
| 2313761 | 1 | poly(A) polymerase (papS) |
| 2313763 | 1 | glutamyl-tRNA synthetase (gltX) |
| 2313780 | 4 | protective surface antigen D15 |
| 2313787 | 1 | oxygen-independent coproporphyrinogen III oxidase (hemN) |
| 2313795 | 1 | integrase/recombinase (xerC) |
| 2313806 | 1 | ribonucleoside-diphosphate reductase 1 alpha subunit (nrdA) |
| 2313807 | 2 | UDP-N-acetylglucosamine pyrophosphorylase (glmU) |
| 2313808 | 1 | iron(III) dicitrate transport protein (fecA) |
| 2313818 | 1 | hydantoin utilization protein A (hyuA) |
| 2313836 | 1 | conserved hypothetical protein |
| 2313838 | 2 | RNA polymerase sigma-54 factor (rpoN) |
| 2313841 | 1 | DNA polymerase III gamma and tau subunits (dnaX) |
| 2313849 | 1 | transcriptional regulator, putative |
| 2313856 | 1 | conserved hypothetical protein |
| 2313860 | 1 | D-alanine:D-alanine ligase A (ddlA) |
| 2313862 | 1 | UDP-MurNac-pentapeptide presynthetase (murF) |
| 2313872 | 1 | conserved hypothetical protein |
| 2313873 | 1 | conserved hypothetical protein |
| 2313885 | 1 | conserved hypothetical integral membrane protein |
| 2313887 | 1 | cell division protein (ftsY) |
| 2313899 | 1 | N-acetylmuramoyl-L-alanine amidase (amiA) |
| 2313900 | 1 | tyrosyl-tRNA synthetase (tyrS) |
| 2313901 | 1 | penta-phosphate guanosine-3'-pyrophosphohydrolase (spoT) |
| 2313910 | 1 | preprotein translocase subunit (secA) |
| 2313911 | 1 | conserved hypothetical integral membrane protein |
| 2313920 | 2 | cadmium-transporting ATPase, P-type (cadA) |
| 2313921 | 1 | sigma-54 interacting protein |
| 2313924 | 2 | trigger factor (tig) |
| 2313934 | 1 | GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase (ribA, ribB) |
| 2313936 | 1 | iron(III) dicitrate transport protein (fecA) |
| 2313948 | 1 | flagellar motor rotation protein (motB) |
| 2313949 | 1 | osmoprotection protein (proWX) |
| 2313951 | 1 | excinuclease ABC subunit C (uvrC) |
| 2313967 | 1 | GTP-binding protein homologue (yphC) |
| 2313973 | 1 | pantothenate metabolism flavoprotein (dfp) |
| 2313977 | 2 | type I restriction enzyme R protein (hsdR) |
| 2313984 | 1 | type I restriction enzyme M protein (hsdM) |
| 2313988 | 1 | alginate O-acetylation protein (algI) |
| 2313995 | 1 | lipid A disaccharide synthetase (lpxB) |
| 2313997 | 1 | flagellar hook (flgE) |
| 2314010 | 1 | catalase |
| 2314011 | 1 | iron-regulated outer membrane protein (frpB) |
| 2314022 | 1 | cysteinyl-tRNA synthetase (cysS) |
| 2314026 | 1 | conserved hypothetical protein |
| 2314046 | 2 | rep helicase, single-stranded DNA-dependent ATPase (rep) |
| 2314055 | 1 | conserved hypothetical integral membrane protein |
| 2314063 | 1 | conserved hypothetical protein |
| 2314064 | 1 | heat shock protein (htpX) |
| 2314076 | 1 | proline/betaine transporter (proP) |
| 2314078 | 1 | amino acid ABC transporter, periplasmic binding protein (yckK) |
| 2314079 | 1 | alanine racemase, biosynthetic (alr) |
| 2314081 | 1 | D-amino acid dehydrogenase (dadA) |
| 2314097 | 1 | glycerol-3-phosphate dehydrogenase, NAD(P)+ dependent |
| 2314107 | 2 | cation efflux system protein (czcA) |
| 2314109 | 1 | glycyl-tRNA synthetase, beta subunit (glyS) |
| 2314120 | 2 | cell division protein (ftsA) protein |
| 2314128 | 1 | IS605 transposase (tnpB) |
| 2314141 | 1 | IS605 transposase (tnpB) |
| 2314153 | 1 | polyphosphate kinase (ppk) |
| 2314155 | 1 | protease (pqqE) |
| 2314157 | 1 | 7-alpha-hydroxysteroid dehydrogenase (hdhA) |
| 2314164 | 1 | conserved hypothetical protein |
| 2314166 | 1 | co-chaperone-curved DNA binding protein A (CbpA) |
| 2314176 | 1 | flagellar motor switch protein (fliM) |
| 2314178 | 1 | ATP-binding protein (ylxH) |
| 2314179 | 1 | flagellar biosynthesis protein (flhF) |
| 2314181 | 1 | conserved hypothetical protein |
| 2314189 | 1 | flagellar biosynthesis protein (flhA) |
| 2314191 | 1 | conserved hypothetical integral membrane protein |
| 2314195 | 1 | translation initiation factor IF-2 (infB) |
| 2314205 | 1 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (queA) |
| 2314218 | 1 | ribosomal protein L11 methyltransferase (prmA) |
| 2314219 | 1 | cell division protein (ftsH) |
| 2314221 | 1 | copper-transporting ATPase, P-type (copA) |
| 2314232 | 1 | multidrug resistance protein (msbA) |
| 2314237 | 1 | cell division protein (ftsK) |
| 2314245 | 1 | IS605 transposase (tnpB) |
| 2314249 | 2 | 6-phosphogluconate dehydratase |
| 2314250 | 1 | glucose-6-phosphate dehydrogenase (g6pD) |
| 2314271 | 1 | flagellar hook-associated protein 1 (HAP1) (flgK) |
| 2314272 | 1 | cytosine specific DNA methyltransferase (BSP6IM) |
| 2314278 | 1 | peptidoglycan associated lipoprotein precursor (omp18) |
| 2314279 | 1 | colicin tolerance-like protein (tolB) |
| 2314281 | 1 | biopolymer transport protein (exbB) |
| 2314294 | 1 | plasmid replication-partition related protein |
| 2314297 | 1 | methionyl-tRNA formyltransferase (fmt) |
| 2314305 | 1 | signal recognition particle protein (ffh) |
| 2314306 | 1 | valyl-tRNA synthetase (valS) |
| 2314324 | 1 | carbon starvation protein (cstA) |
| 2314334 | 1 | outer membrane protein (omp27) |
| 2314341 | 1 | multidrug-efflux transporter |
| 2314342 | 1 | conserved hypothetical protein |
| 2314351 | 1 | histidyl-tRNA synthetase (hisS) |
| 2314352 | 1 | ADP-heptose-lps heptosyltransferase II (rfaF) |
| 2314367 | 1 | multidrug resistance protein (hetA) |
| 2314375 | 1 | polynucleotide phosphorylase (pnp) |
| 2314377 | 1 | conserved hypothetical secreted protein |
| 2314381 | 1 | D-lactate dehydrogenase (dld) |
| 2314389 | 1 | oxygen-independent coproporphyrinogen III oxidase (hemN) |
| 2314404 | 1 | alanyl-tRNA synthetase (alaS) |
| 2314411 | 1 | single-strand DNA-binding protein (ssb) |
| 2314413 | 2 | virulence associated protein homolog (vacB) |
| 2314431 | 2 | NADH-ubiquinone oxidoreductase, NQO3 subunit (NQO3) |
| 2314436 | 1 | NADH-ubiquinone oxidoreductase, NQO12 subunit (NQO12) |
| 2314437 | 1 | NADH-ubiquinone oxidoreductase, NQO13 subunit (NQO13) |
| 2314438 | 1 | NADH-ubiquinone oxidoreductase, NQO14 subunit (NQO14) |
| 2314448 | 1 | anthranilate synthase component I (trpE) |
| 2314480 | 1 | ribosomal protein L4 (rpl4) |
| 2314481 | 1 | ribosomal protein L3 (rpl3) |
| 2314494 | 2 | cation efflux system protein (czcA) |
| 2314510 | 1 | magnesium and cobalt transport protein (corA) |
| 2314520 | 1 | protease |
| 2314521 | 1 | adenine specific DNA methyltransferase (HINFIM) |
| 2314524 | 1 | quinolinate synthetase A (nadA) |
| 2314526 | 1 | 4-hydroxybenzoate octaprenyltransferase (ubiA) |
| 2314528 | 1 | replicative DNA helicase (dnaB) |
| 2314529 | 1 | conserved hypothetical integral membrane protein |
| 2314531 | 1 | response regulator |
| 2314544 | 1 | ATP-dependent protease ATPase subunit (clpX) |
| 2314545 | 1 | UDP-N-acetylglucosamine acyltransferase (lpxA) |
| 2314549 | 1 | ATP-dependent protease (lon) |
| 2314550 | 1 | prephenate dehydrogenase (tyrA) |
| 2314562 | 2 | DNA repair protein (recN) |
| 2314573 | 2 | iron(III) dicitrate transport protein (fecA) |
| 2314575 | 3 | type I restriction enzyme R protein (hsdR) |
| 2314578 | 1 | biotin synthetase (bioB) |
| 2314592 | 1 | UDP-N-acetylenolpyruvoylglucosamine reductase (murB) |
| 2314594 | 1 | flagellar export protein ATP synthase (fliI) |
| 2314595 | 1 | conjugative transfer regulon protein (trbB) |
| 2314596 | 1 | isoleucyl-tRNA synthetase (ileS) |
| 2314602 | 2 | conserved hypothetical ATP-binding protein |
| 2314626 | 1 | 60 kDa inner-membrane protein |
| 2314627 | 1 | thiophene and furan oxidizer (tdhF) |
| 2314638 | 1 | DNA polymerase III alpha-subunit (dnaE) |
| 2314643 | 1 | conserved hypothetical integral membrane protein |
| 2314647 | 1 | DNA polymerase I (polA) |
| 2314650 | 1 | thymidylate kinase (tmk) |
| 2314653 | 2 | DNA helicase II (uvrD) |
| 2314654 | 1 | seryl-tRNA synthetase (serS) |
| 2314661 | 1 | lipase-like protein |
| 2314673 | 1 | UDP-MurNac-tripeptide synthetase (murE) |
| 2314677 | 3 | cation-transporting ATPase, P-type (copA) |
| 2314689 | 2 | ferrodoxin-like protein |
| 2314693 | 1 | selenocysteine synthase SelA, putative |
| 2314694 | 1 | transcription termination factor NusA (nusA) |
| 2314701 | 3 | type III restriction enzyme R protein (res) |
| 2314702 | 1 | DNA recombinase (recG) |
| 2314709 | 2 | chromosomal replication initiator protein (dnaA) |
| 2314713 | 1 | IS605 transposase (tnpB) |
| 2314723 | 2 | transcription-repair coupling factor (trcF) |
| 2314724 | 1 | toxR-activated gene (tagE) |
| 2314725 | 1 | toxR-activated gene (tagE) |
| 2314726 | 2 | folylpolyglutamate synthase (folC) |
| 2314727 | 1 | leucyl-tRNA synthetase (leuS) |
| 2314730 | 1 | protein-export membrane protein (secD) |
| 2314736 | 3 | helicase |
| 2314739 | 1 | cell division protein (ftsI) |
| 2314744 | 2 | cell division protein (ftsW) |
| 2314749 | 1 | penicillin-binding protein 2 (pbp2) |
| 2314750 | 1 | conserved hypothetical GTP-binding protein |
| 2314752 | 1 | rare lipoprotein A (rlpA) |
| 2314753 | 1 | regulatory protein DniR |
| 2314764 | 1 | methicillin resistance protein (llm) |
